SWISS::DRs
SWISS::DRs represents the DR (database crossreference) lines within an SWISS-PROT + TrEMBL entry as specified in the user manual http://www.expasy.org/sprot/userman.html .
SWISS::ListBase.pm
list
An array of arrays. Each element is an array (Database_identifier, primary_key, secondary_key[,further elements]).
Returns a list of all EMBL accession numbers. These are the primary keys of EMBL crossreferences.
Returns a list of all PIDs. These are the secondary keys of EMBL crossreferences.
ATTENTION: The EMBL protein identifiers introduced in 1999 are of the form xxxxx.yy, e.g. CAA33128.1 If $dropVersion is set, the version number (.yy) will be dropped from each PID.
Example:
If the EMBL DR line is
DR EMBL; L37685; AAC41668.1; -.
pids(1) will only return AAC41668, NOT AAC41668.1
True if the first element of a DR line (the DB name) matches $dbTargetName. $dbTargetName has to match in full, not only a partial match.
True if the first element of a DR line (the DB name) does NOT macht $dbTargetName.
Each DR line may be followed by a ** line like
** DR PROSITE; PS12345; XXX_PAT; FALSE_POS_1
These will be stored internally as DR lines with the DB identifier
'_HIDDEN_'. Therefore adding a ** PROSITE line is done as:
$entry->DRs->add(['_HIDDEN_', 'PS12345', 'XXX_PAT', 'FALSE_POS_1']);